PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005155m
Common NameCARUB_v10005155mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 352aa    MW: 39431 Da    PI: 9.1518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005155mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30183241259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe
  Carubv10005155m 183 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPDKFTITYTNEHNHE 241
                      7**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-31168243IPR003657WRKY domain
PROSITE profilePS5081132.707177243IPR003657WRKY domain
SuperFamilySSF1182904.45E-26177243IPR003657WRKY domain
SMARTSM007748.2E-36182242IPR003657WRKY domain
PfamPF031063.3E-25184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MARYVNTRYE LTFSKVNTIN FKIYKHNKRR RDKRGNKRER DMGEVAAYMD EGDLEAIVRG  60
YSGSGDAFSG ESSGGFSPSF CLPMETSSFY EPDMETTGLD ELGELYKPFY PFSTQTILTT  120
SSVSVPEDSR SFLDDKKQRT HGCLLSNGSR VDHIRIPESK SKKSKKNQQK RVVEQVKEEN  180
LLSDAWAWRK YGQKPIKGSP YPRSYYRCSS SKGCLARKQV ERNPQNPDKF TITYTNEHNH  240
ELPTRRNSLA GSTRAKSSQT KPTITKKSGK EVVSSPTSNP TIASADESSV AVQEMCVAEM  300
STHQAAGEIK GMSNGLPSDL MSGTGTFPVF TGDFDELLNS QEFFSGYLWN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-20173243877Probable WRKY transcription factor 4
2lex_A3e-20173243877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633NKRRRDKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423940.0AF442394.1 Arabidopsis thaliana WRKY transcription factor 29 (WRKY29) mRNA, complete cds.
GenBankBT0260710.0BT026071.1 Arabidopsis thaliana At4g23550 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284033.10.0hypothetical protein CARUB_v10005155mg
SwissprotQ9SUS10.0WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLR0F6220.0R0F622_9BRAS; Uncharacterized protein
STRINGAT4G23550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-173WRKY family protein